Bioinformatics

Stratified Immune Profiling Uncovers Prognostic Heterogeneity Beyond MYCN Amplification and Age in Neuroblastoma

Stratified Immune Profiling Uncovers Prognosti...

Bioinformatics
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librarian
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An automated platform for spatial functional modeling and fingerprint analysis of tissue molecular landscapes

An automated platform for spatial functional m...

Bioinformatics
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Saumyadipta Pyne
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PepCL: A replay-based continual learning framework for updating peptide-MHC models

PepCL: A replay-based continual learning frame...

Bioinformatics
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Prathamesh Chati
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A new set of DNA methylation variants in the human genome show predominant tissue specificity and sensitivity to reprogramming with a potential for disease susceptibility.

A new set of DNA methylation variants in the h...

Bioinformatics
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librarian
4 views
ProtSyntax: a protein large language model for decoding post-translational modification syntax and function

ProtSyntax: a protein large language model for...

Bioinformatics
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librarian
3 views
GCM: metric-guided clustering by genetic algorithm for correlation-defined modules

GCM: metric-guided clustering by genetic algor...

Bioinformatics
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Luis Javier Madrigal-Roca
4 views
scRepresenter: a workflow for computing, integrating and benchmarking cellular representations in single-cell transcriptomics

scRepresenter: a workflow for computing, integ...

Bioinformatics
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Andre Lamurias
5 views
Age Stratified Meta Transcriptomic Analysis Reveals Early and Core Dysregulated Pathways in Parkinson's Disease

Age Stratified Meta Transcriptomic Analysis Re...

Bioinformatics
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Dimple Davray
3 views
BaiZe: A Multi-View Dynamic Framework for Simulating and Interpreting Cellular Responses Across Perturbation Contexts

BaiZe: A Multi-View Dynamic Framework for Simu...

Bioinformatics
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librarian
3 views
DNAS-Bench: Deterministic Nucleic Acid Screener Benchmarking

DNAS-Bench: Deterministic Nucleic Acid Screene...

Bioinformatics
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librarian
2 views
From vehicles to wildlife: transferable deep learning for trajectory generation

From vehicles to wildlife: transferable deep l...

Bioinformatics
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librarian
2 views
Interpretable Prediction of Phase Separation and Disease Variant Effects in Intrinsically Disordered Regions

Interpretable Prediction of Phase Separation a...

Bioinformatics
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librarian
3 views
multiScaleAC: Cell-Cell interaction with Moran's I as a function of kernel bandwidth

multiScaleAC: Cell-Cell interaction with Moran...

Bioinformatics
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librarian
2 views
Interpretable Peripheral Blood Cell Classification via Vision-Language Concept Bottleneck and Soft Decision Tree

Interpretable Peripheral Blood Cell Classifica...

Bioinformatics
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librarian
3 views
DPCGS: a computational framework for linking GWAS to single-cell transcriptomics in complex traits and diseases

DPCGS: a computational framework for linking G...

Bioinformatics
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Shaoxing Dai
3 views
Learnable Graph Network Model (LGNM): A Physics Constrained Graph Neural Network with Quantum Hamiltonian Learning

Learnable Graph Network Model (LGNM): A Physic...

Bioinformatics
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Bhuwan Sharma
10 views
EBD-DTI: Episodic Bridge Diffusion for Zero-Shot Cold-Start Drug-Target Interaction Prediction

EBD-DTI: Episodic Bridge Diffusion for Zero-Sh...

Bioinformatics
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librarian
4 views
GDTR: Layer-wise Settling Depth Reveals Biological Grammar in Genomic Foundation Models

GDTR: Layer-wise Settling Depth Reveals Biolog...

Bioinformatics
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librarian
3 views
Metagenomic profiling of bacterial endosymbionts in wild mutant and permethrin-susceptible head lice shows an expanded microbiota in the resistant strain

Metagenomic profiling of bacterial endosymbion...

Bioinformatics
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Jalal Mohammadi
3 views
FloREN: Decoding Immune Regulatory Networks through Interpretable Graph Transformer Patient Representations.

FloREN: Decoding Immune Regulatory Networks th...

Bioinformatics
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librarian
5 views
A Label-Free Multi-Metric Pipeline for Benchmarking Single-Cell RNA-Sequencing Clustering and Testing the Reproducibility of Cell-Type Heterogeneity

A Label-Free Multi-Metric Pipeline for Benchma...

Bioinformatics
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Li Cai
4 views
Leveraging multiplicity in biologically informed neural networks to uncover disease heterogeneity

Leveraging multiplicity in biologically inform...

Bioinformatics
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librarian
4 views
EndoAge Atlas: Non-linear dynamics of endothelial aging reveal organ-specific vascular trajectories in mice

EndoAge Atlas: Non-linear dynamics of endothel...

Bioinformatics
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librarian
6 views
Best for the Eye, Not for the Algorithm: Anisotropy in Fitting Atomic Models in Cryo-EM

Best for the Eye, Not for the Algorithm: Aniso...

Bioinformatics
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librarian
5 views
LiFT: Live foci tracking for quantitative analysis of DNA damage dynamics

LiFT: Live foci tracking for quantitative anal...

Bioinformatics
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Julie Nonnekens
6 views
SMART: A Somatic Mutation Annotation and Reporting Tool for cancer genomics

SMART: A Somatic Mutation Annotation and Repor...

Bioinformatics
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librarian
4 views
Charged amino acid propensities and solubility: lysine is elevated at the termini of helices in E. coli proteins.

Charged amino acid propensities and solubility...

Bioinformatics
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librarian
4 views
PrimeKG-Plus: a literature-derived expansion of a multimodal precision medicine knowledge graph

PrimeKG-Plus: a literature-derived expansion o...

Bioinformatics
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Trinh Trung Duong Nguyen
9 views
Survey and Evaluation of Applied Containerization Practices in Bioinformatics

Survey and Evaluation of Applied Containerizat...

Bioinformatics
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librarian
10 views
Long-read transcriptomics highlights venom gland specialization and Inhibitor Cystine Knot (ICK) rich toxin diversity in Philippine tarantulas

Long-read transcriptomics highlights venom gla...

Bioinformatics
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Myla Santiago-Bautista
9 views
Direct detection of alternative DNA conformations with long-read sequencing and machine learning approaches

Direct detection of alternative DNA conformati...

Bioinformatics
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librarian
8 views
User-friendly transcriptomic data analysis with ArrayAnalysis

User-friendly transcriptomic data analysis wit...

Bioinformatics
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librarian
5 views
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