Bioinformatics

Single-cell alternative polyadenylation analysis reveals mechanistic insights of COVID-19-associated neurological and psychiatric effects

Single-cell alternative polyadenylation analys...

Bioinformatics
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librarian
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Quantifying uncertainty in Protein Representations Across Models and Task

Quantifying uncertainty in Protein Representat...

Bioinformatics
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Prabakaran R
2 views
Pathogenic Missense Mutations in Intrinsically Disordered Regions Reveal Functional and Clinical Signals

Pathogenic Missense Mutations in Intrinsically...

Bioinformatics
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Zsuzsanna Dosztányi
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SAKPE: A Site Attention Kinetic Parameters Prediction Method for Enzyme Engineering

SAKPE: A Site Attention Kinetic Parameters Pre...

Bioinformatics
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Ke-Wei Chen
3 views
XVCF: Exquisite Visualization of VCF Data from Genomic Experiments

XVCF: Exquisite Visualization of VCF Data from...

Bioinformatics
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librarian
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mimicDetector: a pipeline for protein motif mimicry detection in host-pathogen systems

mimicDetector: a pipeline for protein motif mi...

Bioinformatics
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Kaylee Rich
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Limits of deep-learning-based RNA prediction methods

Limits of deep-learning-based RNA prediction m...

Bioinformatics
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librarian
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PyCycleBio: modelling non-sinusoidal-oscillator systems in temporal biology

PyCycleBio: modelling non-sinusoidal-oscillato...

Bioinformatics
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Alexander Bennett
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Athlytics: A Computational Framework for Longitudinal Analysis of Exercise Physiology Metrics from Wearable Sensor Data

Athlytics: A Computational Framework for Longi...

Bioinformatics
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librarian
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Gene-based calibration of high-throughput functional assays for clinical variant classification

Gene-based calibration of high-throughput func...

Bioinformatics
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Predrag Radivojac
1 view
Quantification of single cell-type-specific alternative transcript initiation

Quantification of single cell-type-specific al...

Bioinformatics
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librarian
3 views
Localized Reactivity on Protein as Riemannian Manifolds:A Geometric and Quantum-Informed Basis for Deterministic, Metal-Aware Reactive-Site Prediction

Localized Reactivity on Protein as Riemannian ...

Bioinformatics
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Haneul Park
2 views
MIST-Explorer: The Comprehensive Toolkit for Spatial Omic Analysis and Visualization of Single-Cell MIST Array Data

MIST-Explorer: The Comprehensive Toolkit for S...

Bioinformatics
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librarian
3 views
Genome-wide expression gradient estimation based on local pseudotime in single cell RNA sequencing

Genome-wide expression gradient estimation bas...

Bioinformatics
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Andreas Tjärnberg
1 view
SarcAsM: AI-based multiscale analysis of sarcomere organization and contractility in cardiomyocytes

SarcAsM: AI-based multiscale analysis of sarco...

Bioinformatics
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librarian
0 views
nanoFOLD : sequence design of nanobodies via inverse folding

nanoFOLD : sequence design of nanobodies via i...

Bioinformatics
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librarian
3 views
Strain-level metagenomic profiling using pangenome graphs with PanTax

Strain-level metagenomic profiling using pange...

Bioinformatics
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Alexander Schönhuth
3 views
Enriching stabilizing mutations through automated analysis of molecular dynamics simulations using BoostMut

Enriching stabilizing mutations through automa...

Bioinformatics
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Maximilian Fürst
1 view
Improving RNA Secondary Structure Prediction Through ExpandedTraining Data

Improving RNA Secondary Structure Prediction T...

Bioinformatics
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librarian
2 views
multideconv - Integrative pipeline for cell type deconvolution from bulk RNAseq using first and second generation methods

multideconv - Integrative pipeline for cell ty...

Bioinformatics
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librarian
2 views
Differential cell signaling testing for cell-cell communication inference from single-cell data by dominoSignal

Differential cell signaling testing for cell-c...

Bioinformatics
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librarian
0 views
AbBFN2: A flexible antibody foundation model based on Bayesian Flow Networks

AbBFN2: A flexible antibody foundation model b...

Bioinformatics
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Bora Guloglu
1 view
Lazypipe3: Customizable Virome Analysis Pipeline Enabling Fast and Sensitive Virus Discovery from NGS data

Lazypipe3: Customizable Virome Analysis Pipeli...

Bioinformatics
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Ilja Weinstein
1 view
Deciphering Biosynthetic Gene Clusters with a Context-aware Protein Language Model

Deciphering Biosynthetic Gene Clusters with a ...

Bioinformatics
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librarian
0 views
Spatialproteomics - an interoperable toolbox for analyzing highly multiplexed fluorescence image data

Spatialproteomics - an interoperable toolbox f...

Bioinformatics
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librarian
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AntiCP3: Prediction of Anticancer Proteins Using Evolutionary Information from Protein Language Models

AntiCP3: Prediction of Anticancer Proteins Usi...

Bioinformatics
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Amisha Gupta
1 view
The impact of sex, age, and genetic ancestry on DNA methylation across tissues

The impact of sex, age, and genetic ancestry o...

Bioinformatics
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librarian
0 views
PhysDock: A Physics-Guided All-Atom Diffusion Model for Protein-Ligand Complex Prediction

PhysDock: A Physics-Guided All-Atom Diffusion ...

Bioinformatics
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librarian
16 views
Chromatix: a differentiable, GPU-accelerated wave-optics library

Chromatix: a differentiable, GPU-accelerated w...

Bioinformatics
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Diptodip Deb
1 view
A Case-Based Explainable Graph Neural Network Framework for Mechanistic Drug Repositioning

A Case-Based Explainable Graph Neural Network ...

Bioinformatics
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librarian
1 view
Explainable deep learning for identifying cancer driver genes based on the Cancer Dependency Map

Explainable deep learning for identifying canc...

Bioinformatics
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librarian
1 view
Evaluation of epistasis detection methods for quantitative phenotypes

Evaluation of epistasis detection methods for ...

Bioinformatics
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librarian
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